The MIC is very proud to help so many research projects come to fruition. Below is a list of those publications. If you would like us to include your publication in the list below, please fill out the form here: https://goo.gl/forms/Nkw1N9ixTOjFK6P53

2019

Coming soon…  accepted…  Ciliary gene RPGRIP1L is required for hypothalamic arcuate neuron development…

2018

Lu D, Zhang Y, Lai M, Lee A, Xie C, Lin J, Lei T, Lin Z, Kley CS, Huang J, Rabani E, Yang P. (2018), Giant Light-Emission Enhancement in Lead Halide Perovskites by Surface Oxygen Passivation, Nano Lett., 18 (11), pp 6967 – 6973, https://pubs.acs.org/doi/abs/10.1021/acs.nanolett.8b02887

Blair JD, Hockemeyer D, Bateup HS (2018), Genetically engineered human cortical spheroid models of tuberous sclerosis, Nat Med. 2018 Oct;24(10):1568-1578. doi: 10.1038/s41591-018-0139-y. Epub 2018 Aug 20.

Tiriac A, Smith BE, Feller MB. (2018) Light Prior to Eye Opening Promotes Retinal Waves and Eye-Specific Segregation, Neuron. 6273(18) 30899-7. doi: 10.1016/j.neuron.2018.10.011

Fazel Darbandi S, Robinson Schwartz SE, Qi Q, Catta-Preta R, Pai EL, Mandell JD, Everitt A, Rubin A, Krasnoff RA, Katzman S, Tastad D, Nord AS, Willsey AJ, Chen B, State MW, Sohal VS, Rubenstein JLR, Neonatal Tbr1 Dosage Controls Cortical Layer 6 Connectivity, Neuron , Volume 100 , Issue 4 , 831 – 845.e7. doi: 10.1016/j.neuron.2018.09.027

Zachary Louis Newman, Adam Hoagland, Krishan Aghi, Kurtresha Lumanlan Worden, Sabrina Leah Levy, Jun Ho Son, Luke PyungSe Lee, and Ehud Yeheskel Isacoff, Input-specific plasticity and homeostasis at the Drosophila larval neuromuscular junction, Neuron, March 22, 2018, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5464967/

Kitaoka M, Heald R, Gibeaux R (2018), Spindle assembly in egg extracts of the Marsabit clawed frog, Xenopus borealis, Cytoskeleton (Hoboken). Jun;75(6):244-257. doi: 10.1002/cm.21444. Epub 2018 Apr 17.

Schaum, et al., Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris, Nature, October 3, 2018, https://www.nature.com/articles/s41586-018-0590-4.

Boehning M, Dugast-Darzacq C, Rankovic M, Hansen AS, Yu T, Marie-Nelly H, McSwiggen DT, Kokic G, Dailey GM, Cramer P, Darzacq X, Zweckstetter M., RNA polymerase II clustering through carboxy-terminal domain phase separation, Nat Struct Mol Biol. 2018 Aug 20. doi: 10.1038/s41594-018-0112-y. [Epub ahead of print] PMID: 30127355

Chong S, Dugast-Darzacq C, Liu Z, Dong P, Dailey GM, Cattoglio C, Heckert A, Banala S, Lavis L, Darzacq X, Tjian R., Imaging dynamic and selective low-complexity domain interactions that control gene transcription, Science. 2018 Jul 27;361(6400). pii: eaar2555. doi: 10.1126/science.aar2555. Epub 2018 Jun 21. PMID: 29930090

Taro Ohkawa and Matthew D. Welch (2018), Baculovirus Actin-Based Motility Drives Nuclear Envelope Disruption and Nuclear Egress, Current Biology, DOI: https://doi.org/10.1016/j.cub.2018.05.027

Ryan D. Morrie & Marla B. Feller (2018), A Dense Starburst Plexus Is Critical for Generating Direction Selectivity. Current Biology28(8), 1204–1212. http://doi.org/10.1016/j.cub.2018.03.001

Jen-Yi Lee and Maiko Kitaoka (2018), A beginner’s guide to rigor and reproducibility in fluorescence imaging experiments, MBoC, Published Online:28 Jun 2018https://doi.org/10.1091/mbc.E17-05-0276.

Jacqueline Gayet-PrimoYaeger DBKhanjian RAPuthussery T (2018), Heteromeric KV2/KV8.2 Channels Mediate Delayed Rectifier Potassium Currents in Primate Photoreceptors, J Neurosci. 2018 Apr 4;38(14):3414-3427. PMID: 29483285 PMCID: PMC5895036 [Available on 2018-10-04] DOI: 10.1523/JNEUROSCI.2440-17.2018.

Daniel J. Kramer, Davide Risso, Polina Kosillo, John Ngai and Helen S. Bateup (2018), Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability, ENEURO 0152-18.2018. DOI: https://doi.org/10.1523/ENEURO.0152-18.2018.

Katelyn N. BenthallStacie L. OngHelen S. Bateup (2018), Corticostriatal Transmission Is Selectively Enhanced in Striatonigral Neurons with Postnatal Loss of Tsc1, https://doi.org/10.1016/j.celrep.2018.05.037.

Rose Z Hill, Benjamin U Hoffman, Takeshi Morita, Stephanie M Campos, Ellen A Lumpkin, Rachel B Brem, Diana M Bautista (2018), The signaling lipid sphingosine 1-phosphate regulates mechanical pain, eLife 2018;7:e33285 DOI: 10.7554/eLife.33285.

Gibeaux R, Acker R, Kitaoka M, Georgiou G, van Kruijsbergen I, Ford B, Marcotte EM, Nomura DK, Kwon T, Veenstra GJC, Heald R. (2018), Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus, Nature. 2018 Jan 18;553(7688):337-341. doi: 10.1038/nature25188. Epub 2018 Jan 10.

2017

Newman ZL, Hoagland, A, Aghi K, Worden KL, Levy SL, Son JH, Lee LP, Isacoff EY. Input-specific plasticity and homeostasis at the Drosophila larval neuromuscular junction. Neuron 2017; 93:1388–1404. PMCID: PMC5464967; https://dx.doi.org/10.1016%2Fj.neuron.2017.02.028

Livne-Bar I, Wei J, Liu HH, Alqawlaq S, Won GJ, Tuccitto A et al. Astrocyte-derived lipoxins A4 and B4 promote neuroprotection from acute and chronic injury. The Journal of Clinical Investigation, 2017, 127(12):4403-4414. PMID:29106385.

Crest, J, A Diz-Muñoz, DY Chen, DA Fletcher, D Bilder (2017), Organ sculpting by patterned extracellular matrix stiffness, eLife 2017;6:e24958 DOI: 10.7554/eLife.24958

Kimberly M. SogiKatie A. LienJeffrey R. JohnsonNevan J. Krogan, and Sarah A. Stanley (2017), The Tyrosine Kinase Inhibitor Gefitinib Restricts Mycobacterium tuberculosis Growth through Increased Lysosomal Biogenesis and Modulation of Cytokine Signaling, ACS Infect. Dis., 2017, 3 (8), pp 564–574.

2016

Carlos Pantoja, Adam Hoagland, Elizabeth C. Carroll, Vasiliki Karalis, Alden Conner, Ehud Y. Isacoff (2016), Neuromodulatory Regulation of Behavioral Individuality in Zebrafish, Neuron, Volume 91, Issue 3, Pages 587-601, https://doi.org/10.1016/j.neuron.2016.06.016.

Bos R, Gainer C, Feller MB (2016), Role for Visual Experience in the Development of Direction-Selective Circuits, Curr Biol. 2016 May 23;26(10):1367-75. doi: 10.1016/j.cub.2016.03.073.

Chen DY, Lipari KR, Dehghan Y, Streichan SJ, Bilder D (2016), Symmetry Breaking in an Edgeless Epithelium by Fat2-Regulated Microtubule Polarity, Cell Rep.  May 10;15(6):1125-33. doi: 10.1016/j.celrep.2016.04.014.

Berlin, S., Szobota, S., Reiner, A., Carroll, E. C., Kienzler, M. A., Guyon, A., … Isacoff, E. Y. (2016), A family of photoswitchable NMDA receptors. Raman IM, ed. eLife. 2016;5:e12040. doi:10.7554/eLife.12040.

Harris RESetiawan LSaul JHariharan IK (2016), Localized epigenetic silencing of a damage-activated WNT enhancer limits regeneration in mature Drosophila imaginal discs. Elife. Feb 3;5. pii: e11588. doi: 10.7554/eLife.11588.

Bandaria, P. Qin, V. Berk, S. Chu, and A. Yildiz (2016), Shelterin Protects Chromosome Ends by Compacting Telomeric Chromatin, Feb 11;164(4):735-46. doi: 10.1016/j.cell.2016.01.036.

Levitz, J., Popescu, A. T., Reiner, A., & Isacoff, E. Y. (2016). A Toolkit for Orthogonal and in vivo Optical Manipulation of Ionotropic Glutamate Receptors. Frontiers in Molecular Neuroscience9, 2. http://doi.org/10.3389/fnmol.2016.00002.

Palty, R., & Isacoff, E. Y. (2016). Cooperative Binding of Stromal Interaction Molecule 1 (STIM1) to the N and C Termini of Calcium Release-activated Calcium Modulator 1 (Orai1). The Journal of Biological Chemistry291(1), 334–341. http://doi.org/10.1074/jbc.M115.685289.

Gao Y, Min K, Zhang Y, Su J, Greenwood M, and Gronert K (2016). Female-Specific Downregulation of Tissue Polymorphonuclear Neutrophils Drives Impaired Regulatory T Cell and Amplified Effector T Cell Responses in Autoimmune Dry Eye Disease, J Immunology. https://www.ncbi.nlm.nih.gov/pubmed/26324767

Berlin S, Carroll EC, Newman ZL, Okada HO, Quinn CM, Kallman B, Rockwell NC, Martin SS, Lagarias JC, and Isacoff EY (2016)  Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging, Nat Methods. https://www.ncbi.nlm.nih.gov/pubmed/26167640

Chang CW and Kumar S (2016). Differential Contributions of Nonmuscle Myosin II Isoforms and Functional Domains to Stress Fiber Mechanics, Sci Rep. DOI: 10.1038/srep13736

2015

Gaub, B. M., Berry, M. H., Holt, A. E., Isacoff, E. Y., & Flannery, J. G. (2015). Optogenetic Vision Restoration Using Rhodopsin for Enhanced Sensitivity. Molecular Therapy23(10), 1562–1571. http://doi.org/10.1038/mt.2015.121.

Berlin, S., Carroll, E. C., Newman, Z. L., Okada, H. O., Quinn, C. M., Kallman, B., … Isacoff, E. Y. (2015). Photoactivatable Genetically-Encoded Calcium Indicators for targeted neuronal imaging. Nature Methods12(9), 852–858. http://doi.org/10.1038/nmeth.3480.

Rosa, J. M., Bos, R., Sack, G. S., Fortuny, C., Agarwal, A., Bergles, D. E., … Feller, M. B. (2015). Neuron-glia signaling in developing retina mediated by neurotransmitter spillover. eLife4, e09590. http://doi.org/10.7554/eLife.09590.

Crowder, M. E., Strzelecka, M., Wilbur, J. D., Good, M. C., von Dassow, G., & Heald, R. (2015). A comparative analysis of spindle morphometrics across metazoans. Current Biology : CB25(11), 1542–1550. http://doi.org/10.1016/j.cub.2015.04.036.

D.E. Liu, T.J. Dursch, Y. Oh, D.T. Bregante, S.Y. Chan, C.J. Radke (2015), Equilibrium water and solute uptake in silicone hydrogels, Acta Biomaterialia, Volume 18; 112-117, https://doi.org/10.1016/j.actbio.2015.02.019.

T.J. Dursch, D.E. Liu, Y. Oh, C.J. Radke (2015), Fluorescent solute-partitioning characterization of layered soft contact lenses,    Acta Biomaterialia, Volume 15; 48-54, https://doi.org/10.1016/j.actbio.2014.11.046.

Carroll, E. C., Berlin, S., Levitz, J., Kienzler, M. A., Yuan, Z., Madsen, D., … Isacoff, E. Y. (2015). Two-photon brightness of azobenzene photoswitches designed for glutamate receptor optogenetics. PNAS112(7), E776–E785. http://doi.org/10.1073/pnas.1416942112.

Hoepker AC, Wang A, Le Marois A, Suhling K, Yan Y, and Marriott G (2015). Genetically encoded sensors of protein hydrodynamics and molecular proximity, Proc National Academy Science USA. 112(20:E2569-74). https://www.ncbi.nlm.nih.gov/pubmed/25931526

Ball RW, Peled ES, Guerrero G, and Isacoff EY (2015). BMP signaling and microtubule organization regulate synaptic strength, Neuroscience. 2015 April 16;291:155-66. DOI: 101.106/j.neuroscience.2015.01.069.

Reiner A, Levitz J, and Isacoff EY (2015). Controlling ionotropic and metabotropic glutamate receptors with light: principles and potential (2015). Current Opin Pharamacology. 2015 Feb; 20:135-43. DOI: 10.1016/j.coph.2014.12.008

Friedmann D, Hoagland A, Berlin S, and Isacoff EY (2015) A spinal opsin controls early neural activity and drives a behavioral light response. Current Biology. 2014 Dec, 4. DOI: https://doi.org/10.1016/j.cub.2014.10.055

2014

Gaub BM, Berry MH, Holt AE, Reiner A, Kienzler MA, Dolgova N, Nikonov S, Aguirre GD, Beltran WA, Flannery JG, and Isacoff EY (2014) Restoration of visual function by expression of a light-gated mammalian ion channel in retinal ganglion cells or ON-bipolar cells. Proc National Academy Science. 2014 Dec 23. DOI: 10.1073/pnas.1414162111

Paszek, M. J., DuFort, C. C., Rossier, O., Bainer, R., Mouw, J. K., Godula, K., … Weaver, V. M. (2014). The cancer glycocalyx mechanically primes integrin-mediated growth and survival. Nature511(7509), 319–325. http://doi.org/10.1038/nature13535.

Truong, T. N., Li, H., Hong, Y.-K., & Chen, L. (2014). Novel Characterization and Live Imaging of Schlemm’s Canal Expressing Prox-1. PLoS ONE9(5), e98245. http://doi.org/10.1371/journal.pone.0098245.

Truong, T., Huang, E., Yuen, D., & Chen, L. (2014). Corneal Lymphatic Valve Formation in Relation to Lymphangiogenesis. Investigative Ophthalmology & Visual Science55(3), 1876–1883. http://doi.org/10.1167/iovs.13-12251.

Pool AH, Kvello P, Mann K, Cheung SK, Gordon MD, Wang L, and Scott K (2014) Four GABAergic interneurons impose feeding restraint in drosophila. Neuron 2014 Jul 2. DOI: 10.1016/j.neuron.2014.05.006

Forster R, Chiba K, Schaeffer L, Regalado SG, Lai CS, Gao Q, Kiani S, Farin HF, Clevers H, Cost GJ, Chan A, Rebar EJ, Umov FD, Gregory PD, Pachter L, Jaenisch R, and Hockemeyer D. (2014) Human intestinal tissue with adult stem cell properties derived from pluripotent stem cells Stem Cell Reports 2014 Jun 3. DOI: 10.1016/j.stemcr.2014.05.001

Riera CE, Huising MO, Follett P, Leblanc M, Halloran J, Van Andel R, de Magalhaes Filho CD, Merkwirth C, and Dillin A (2014) TRPV1 pain receptors regulate longevity and metabolism by neuropeptide signaling Cell 2014 May 22: 157(5):1023-36. DOI: 10.1016/j.cell.2014.03.051

Reiner A and Isacoff EY (2014) Tethered ligands reveal glutamate receptor desensitization depends on subunit occupancy National Chemical Biology 2014 April; 10(4):273-80. DOI: 10.1038/nchembio.1458

Peled ES, Newman ZL, and Isacoff EY (2014) Evoked and spontaneous transmission favored by distinct sets of synapses Current Biology 2014 MAr 3; 24(5): 484-93. DOI: 101.1016/j.cub.2014.01.022

Dursch TJ, Taylor NO, Liu DE, Wu RY, Prausnitz JM, and Radke CJ (2014) Water soluble drug partitioning and adsorption in HEMA/MAA hydrogels 2014 Jan;35(2):620-9. DOI 10.1016/j.biomaterials.2103.09.109

2013

Liu DE, Kotsmar C, Nguyen F, Sells T, Taylor NO, Prausnitz JM, and Radke CJ (2013) Macromolecule sorption and diffusion in HEMA/MAA hydrogels American Chemical Society 2013 November 14; pp 18109-18120. DOI: 10.1021/ie402148u

Pinto L. Goard MJ, Estandian D, Xu M, Kwan AC, Lee SH, Harrison TC, Feng G, and Dan Y (2013) Fast modulation of visual perception by basal forebrain cholinergic neurons National Neuroscience 2013 Dec; 16(12):1857-1863. DOI: 10.1038/nn.3552

Chang CW and Kumar S (2013) Vinculin tension distributions of individual stress fibers within cell-matrix adhesions  Journal Cell Science 2013; 126: 3021-3030. DOI 10.1242/jcs.119032

Kirby ED, Muroy SE, Sun WG, Covarrubias D, Leong MJ, Barchas LA, and Kaufer D (2013) Acute stress enhances adult rat hippocampal neurogenesis and activation of newborn neurons via secreted astrocytic FGF2. Elife 2013 Apr 16;2:e00362. DOI: 10.7554/eLife.00362

Levitz J, Pantoja C, Gaub B, Janovjak H, Reiner A, Hoagland A, Schoppik D, Kane B, Stawaski P, Schier AF, Trauner D, and Isacoff EY (2013) Optical control of metabotropic glutamate receptors National Neuroscience 2013 Apri; 16(4):507-16. DOI: 10.1038/nn.3346

Miyashita T, Shao YR, Chung K, Pourzia O, and Feldman DE (2013) Long-term channelrhodopsin-2 (ChR2) expression can induce abnormal axonal morphology and targeting in cerebral cortex Front Neural Circuits 2013 Jan 31; 7:8. DOI: 10.3389/fncir.2013.00008

Katibah GE, Lee HJ, Huizar JP, Vogan JM, Alber T, and Collins K (2013) tRNA binding, structure, and localization of the human interferon-induced protein IFIT5 Molecular Cell 2013 Feb 21;49(4):743-50. DOI: 10.1016/j.molcel.2012.12.015

2012

Delaune EA, Francois P, Shih NP, and Amacher SL (2012) Single-cell-resolution imaging of the impact of Notch signaling and mitosis on segmentation clock dynamics Development Cell. 2012 Nov 13; 23(5):995-1005. DOI: 10.10106/j.devcel.2012.09.009

Warp E, Agarwal G, Wyart C, Friedmann D, Oldfield CS, Conner A, Del Bene F, Arrenberg AB, Baier H, and Isacoff EY (2012) Emergence of patterned activity in the developing zebrafish spinal cord Current Biology 2012 Jan 24; 22(2):93-102. DOI: 10.1016/j.cub.2011.12.002

Earlier

Yudushkin IA and Vale RD (2010) Imaging T-cell receptor activation reveals accumulation of tyrosine-phosphorylated CD3ζ in the endosomal compartment  Proc National Academy Science U.S.A 2010 Dec 21; 107(51):22128-33. DOI: 10.1073/pnas.1016388108

Ladi E, Schwickert Ta, Chtanova T, Chen Y. Herzmark P, Yin X, Aaron H, Chan SW, Lipp M, Roysam B, and Robey EA (2008) Thymocyte-dendritic cell interactions near sources of CCR7 ligands in the thymic cortex. J Immunology 2008 Nov 15; 181(10): 7014-23

Zhu L, Zhou R, Mettler S, Wu T, Abbas A, Delaney J, and Forte JG (2007) High turnover of ezrin T567 phosphorylation: conformation, activity, and cellular function  American Journal of Physiological Cell Physiology 2007 Sep; 293(3):C874-84

Szobota S, Gorostiza P, Del Bene F, Wyart C, Fortin DL, Kolstad KD, Tulyathan O, Volgrad M, Numano R, Aaron HL, Scott EK, Kramer RH, Flnnery J, Baier H, Trauner D, and Isacoff EY (2007) Remote control of neuronal activity with a light-gated glutamate receptor Neuron 2077 May 24;54(4):535-45

Witt Cm Raychaudhuri S, and Chakraborty AK (2005) Movies, measurement, and modeling: the three Ms of mechanistic immunology. J Exp Med 2005 Feb 21;201(4):501-4

Wilt CM and Robey EA (2005)  Thymopoiesis in 4 dimensions. Semin Immunol 2005 Feb; 17(1):95-102

Henry CA and Amacher SL (2004) Zebrafish slow muscle cell migration induces a wave of fast muscle morphogenesis. Development Cell 2004 Dec; 7(6):917-23

Daggett DF, and Boyd CA, Gautier P, and Bryson-Richardson RJ, Thisse C, Thisse B, Amacher Sl, and Currie PD (2004) Developmentally restricted actin-regulatory molecules control morphogenetic cell movements in the zebrafish gastrula Current Biology 2004 Sep 21; 14(18):1632-8

Rea R, Li J, Dharia A, Levitan ES, Sterling P, and Kramer RH (2004) Streamlined synaptic vesicle cycle in cone photoreceptor terminals Neuron 2004 Mar 4;41(5):755-66

Hybiske K, Ichikawa JK, Huang V, Lory SJ, and Machen TE (2004) Cystic fibrosis airway epithelial cell polarity and bacterial flagellin determine host response to Pseudomonas aeruginosa Cell Microbiology. 2004 Jan;6(1):49-63

Henry CA, Urban MK, Dill KK, Merlie JP, Page MF, Kimmel CB, and Amacher SL (2002) Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries Development 2002 Aug; 129(15):3693-704